Information for 16-RTTTASATAA (Motif 24)

C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
Reverse Opposite:
G C A T G C A T C T G A C G A T A T C G C G A T C G T A G T C A C G T A G A C T
p-value:1e-12
log p-value:-2.890e+01
Information Content per bp:1.603
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets41.1 +/- 25.3bp
Average Position of motif in Background41.9 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--RTTTASATAA
ATATTTACATA-
 A C G T A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--RTTTASATAA
TAATTTGCATAA
 A C G T A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:RTTTASATAA
ATTTGCATA-
 C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-RTTTASATAA-
AATTTGCATANT
 A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---RTTTASATAA
BTVATTWGCATA-
 A C G T A C G T A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RTTTASATAA
TAATTTGCATAA
 A C G T A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

FOXC1/MA0032.2/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--RTTTASATAA
ATATTTACATA-
 A C G T A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:8
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------RTTTASATAA-
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A A C G T
T G C A A G T C A T G C G C A T C G A T C G A T C T A G A G C T C G A T A C G T C G T A G A T C C G T A G C A T C G A T G C A T G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:RTTTASATAA
ATTTGCATA-
 C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RTTTASATAA
ATTTGCATAA
 C T G A G C A T C A G T G C A T C G T A A T G C C G T A G A C T C G T A C G T A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A