Information for 11-CAGGTTAATG (Motif 19)

T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G
Reverse Opposite:
A T G C C G T A A C G T A G C T C G T A G T C A A G T C G T A C A G C T A C T G
p-value:1e-8
log p-value:-1.891e+01
Information Content per bp:1.782
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif140.8
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets59.3 +/- 29.8bp
Average Position of motif in Background51.2 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CAGGTTAATG-
---GKTAATGR
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T
A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAGGTTAATG---
---GTTAATGGCC
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

NKX6-2/MA0675.1/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CAGGTTAATG--
----TTAATTAN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

HOXB3/MA0903.1/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAGGTTAATG---
---NNTAATTANN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

HOXA2/MA0900.1/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CAGGTTAATG---
---GNTAATTANN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

HOXB2/MA0902.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CAGGTTAATG---
---NNTAATTANN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CAGGTTAATG--
----TTAATTAN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CAGGTTAATG--
----NTAATTGG
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAGGTTAATG---
---NTTAATTAGN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T

EVX1/MA0887.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAGGTTAATG---
---GNTAATTANN
 T G A C C T G A A C T G A C T G A C G T A C G T C T G A G T C A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C