Information for 8-KACARAGGGTCAS (Motif 15)

C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
Reverse Opposite:
A T C G A C G T T C A G G C T A T A G C A G T C G A T C C G A T A G T C C A G T A C T G G C A T G T C A
p-value:1e-10
log p-value:-2.461e+01
Information Content per bp:1.614
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.53%
Number of Background Sequences with motif359.5
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets45.7 +/- 25.9bp
Average Position of motif in Background46.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---KACARAGGGTCAS
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Rarb/MA0857.1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----KACARAGGGTCAS
AAAGGTCAAAAGGTCA-
 A C G T A C G T A C G T A C G T C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----KACARAGGGTCAS
GTAGGTCACTGGGTCA-
 A C G T A C G T A C G T A C G T C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:KACARAGGGTCAS
----AGRGGTCA-
 C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---KACARAGGGTCAS
GAGGTCAAAAGGTCA-
 A C G T A C G T A C G T C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.63
Offset:6
Orientation:forward strand
Alignment:KACARAGGGTCAS
------AGGTCA-
 C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KACARAGGGTCAS---
TCTCAAAGGTCACGAG
 C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:KACARAGGGTCAS---
TCTCAAAGGTCACCTG
 C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:KACARAGGGTCAS
AACAAAGG-----
 C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:KACARAGGGTCAS----
NTNNNGGGGTCANGNNN
 C A G T C G T A G T A C G T C A T C A G C G T A C A T G T C A G A T C G C G A T A G T C G T C A T A G C A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A