Information for 9-CCTTTGTTCG (Motif 18)

A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
Reverse Opposite:
A T G C C T A G C G T A C G T A A G T C C T G A G T C A C G T A A C T G A C T G
p-value:1e-7
log p-value:-1.617e+01
Information Content per bp:1.864
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif72.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets59.5 +/- 22.4bp
Average Position of motif in Background46.8 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTCG
YCTTTGTTCC
 A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTTCG---
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTCG
CCTTTGTTTT
 A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTCG
CCTTTGTT--
 A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTTCG---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCTTTGTTCG
NCCATTGTTC-
 A C G T A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTCG
CCWTTGTYYB
 A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTCG
CCWTTGTY--
 A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCTTTGTTCG
NCCATTGTTY-
 A C G T A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CCTTTGTTCG
CCATTGTTYB
 A G T C G T A C A C G T A C G T A G C T A C T G A C G T A C G T G A T C T A C G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G