Information for 3-GTTGCCATGGCAACCV (Motif 4)

A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
Reverse Opposite:
A G C T A C T G A T C G A C G T A G C T C A T G A G T C A G T C C G T A G C A T T A C G C T A G G T A C C T G A C G T A G T A C
p-value:1e-29
log p-value:-6.688e+01
Information Content per bp:1.736
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif34.5
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets60.6 +/- 19.0bp
Average Position of motif in Background46.8 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGGCAACCV
GTTGCCATGGCAACM-
 A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:GTTGCCATGGCAACCV
GTTGCCATGGCAACCG
 A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

RFX5/MA0510.2/Jaspar

Match Rank:3
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAACCV
CGTTGCCATGGCAACG-
 A C G T A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G A C G T

RFX2/MA0600.2/Jaspar

Match Rank:4
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCATGGCAACCV
CGTTGCCATGGCAACG-
 A C G T A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T

RFX3/MA0798.1/Jaspar

Match Rank:5
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAACCV
CGTTGCCATGGCAACG-
 A C G T A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:GTTGCCATGGCAACCV
-TTGCCATGGCAACC-
 A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGGCAACCV
GTTGCCATGGCAAC--
 A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:GTTGCCATGGCAACCV
-TTGCCATGGCAACN-
 A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAACCV
CGTTGCCATGGCAACG-
 A C G T A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GTTGCCATGGCAACCV-
--TACCATAGCAACGGT
 A C T G A C G T A G C T C A T G A G T C A G T C C G T A G A C T C T A G C T A G G A T C C T G A C G T A A T G C G T A C T C G A A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T