Information for 4-CBCYGATTGGCTV (Motif 3)

A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G
Reverse Opposite:
A G T C T C G A C T A G A G T C A G T C C G T A T C G A A G C T T A G C C T A G A T C G T G A C T C A G
p-value:1e-33
log p-value:-7.677e+01
Information Content per bp:1.638
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif6.93%
Number of Background Sequences with motif406.6
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets53.4 +/- 25.4bp
Average Position of motif in Background46.7 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:CBCYGATTGGCTV
--CCGATTGGCT-
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:CBCYGATTGGCTV--
---TGATTGGCTANN
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:CBCYGATTGGCTV----
--CTGATTGGTCNATTT
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----CBCYGATTGGCTV-
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.76
Offset:6
Orientation:forward strand
Alignment:CBCYGATTGGCTV
------TTGGCA-
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:CBCYGATTGGCTV-
-----NTTGGCANN
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CBCYGATTGGCTV-
ACTCCTAATTAGTCGT
 A C G T A C G T A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CBCYGATTGGCTV
--TTGATTGN---
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T

PH0109.1_Nkx1-1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CBCYGATTGGCTV-
NCCCACTAATTAGCGCA
 A C G T A C G T A C G T A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CBCYGATTGGCTV-
----NNTTGGCANN
 A G T C A C T G A T G C G A T C A T C G C T G A A G C T A C G T A C T G A C T G G A T C A G C T T C A G A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C