Information for 9-GCCATTGCGT (Motif 11)

T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T
Reverse Opposite:
T C G A G T A C C T A G T A G C T G C A T C G A C A G T A C T G T C A G A G T C
p-value:1e-6
log p-value:-1.500e+01
Information Content per bp:1.685
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif909.2
Percentage of Background Sequences with motif1.91%
Average Position of motif in Targets44.3 +/- 22.4bp
Average Position of motif in Background49.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GCCATTGCGT---
NNNCCATTGTGTNAN
 A C G T A C G T T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT-
-CCATTGTTYB
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T A C G T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCCATTGCGT
NCCATTGTTY
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCTTTGTT-
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT-
-CCATTGTTTT
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCATTGTTC
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT
-CCWTTGTY-
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCCATTGCGT
NCCATTGTTC
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCATTGCGT-
-CCWTTGTYYB
 T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCCATTGCGT---
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T T C A G A G T C G T A C G T C A A G C T A C G T A T C G G A T C C A T G A G C T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T