Information for 6-AGAGSGCRGCACR (Motif 6)

C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
Reverse Opposite:
A G C T A C T G A C G T A C T G A G T C A G C T A T C G A G T C T A G C A G T C A C G T A G T C C G A T
p-value:1e-13
log p-value:-3.035e+01
Information Content per bp:1.894
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.1 +/- 16.2bp
Average Position of motif in Background44.1 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGAGSGCRGCACR
CAAGATGGCGGC---
 A C G T A C G T C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGAGSGCRGCACR
---GGGCGGGACC
 C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AGAGSGCRGCACR-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGAGSGCRGCACR
CAAGATGGCGGC---
 A C G T A C G T C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----AGAGSGCRGCACR
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGAGSGCRGCACR
RGKGGGCGGAGC-
 C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGAGSGCRGCACR-------
----AGCGGCACACACGCAA
 C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGAGSGCRGCACR
GGGNGGGGGCGGGGC-
 A C G T A C G T A C G T C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.53
Offset:-8
Orientation:forward strand
Alignment:--------AGAGSGCRGCACR
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AGAGSGCRGCACR-------
----CGAAGCACACAAAATA
 C G T A A C T G C G T A A C T G A T C G A C T G A T G C C T G A A C T G A G T C C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A