Information for 11-KCMTGSCWGTCTC (Motif 15)

A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C
Reverse Opposite:
A C T G C T G A A C T G C G T A A G T C C G T A A C T G A T C G A G T C C G T A A C G T A C T G G T A C
p-value:1e-8
log p-value:-2.001e+01
Information Content per bp:1.875
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.1 +/- 21.1bp
Average Position of motif in Background46.7 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:KCMTGSCWGTCTC--
--CTGTCTGTCACCT
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KCMTGSCWGTCTC-
GTCATGCHTGRCTGS
 A C G T A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:KCMTGSCWGTCTC-
------CTGTCTGG
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KCMTGSCWGTCTC
-SCTGTCAVTCAV
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:KCMTGSCWGTCTC
-NCTGTCAATCAN
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:KCMTGSCWGTCTC--
---TGTCTGDCACCT
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:KCMTGSCWGTCTC-
----VBSYGTCTGG
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:KCMTGSCWGTCTC
GSCTGTCACTCA-
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:KCMTGSCWGTCTC
-CTTGGCAA----
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:KCMTGSCWGTCTC
-----GCTGTG--
 A C T G A G T C G T C A A C G T A C T G A T G C A G T C C G A T A C T G C G A T A G T C A G C T A G T C
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T