Information for 3-RGASRGYAMRGGGYAM (Motif 7)

C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
Reverse Opposite:
A C G T A C G T C T G A G T A C A G T C G T A C A G C T A C G T C G A T C T A G G T A C A G C T A T G C A C G T A G T C A G C T
p-value:1e-13
log p-value:-3.083e+01
Information Content per bp:1.785
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.8 +/- 16.3bp
Average Position of motif in Background50.8 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
-TAGGGCAAAGGTCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
GTAGGGCAAAGGTCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
-GAGGTCAAAGGTCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
AGGGGTCAGAGGTCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RGASRGYAMRGGGYAM
-TGGGGCAAAGGTCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

LEF1/MA0768.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
AAAGATCAAAGGGTT-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
AGAGTCCAAAGTCCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM
-GAGGTCAAAGGTCA-
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RGASRGYAMRGGGYAM
CANAGNNCAAAGTCCA-
 A C G T C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RGASRGYAMRGGGYAM-
AAAGGTCAAAGGTCAAC
 C T G A A C T G C G T A A T C G C T G A A C T G A G T C C G T A G T C A C T G A A C T G C T A G A C T G A G C T C G T A G T C A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C