Information for 2-CACGNGGCGGGGCTGC (Motif 6)

A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
Reverse Opposite:
T A C G A G T C T C G A A C T G A T G C A T G C A T G C T A G C T C A G A T G C A T G C A C G T A T G C A T C G A C G T A C T G
p-value:1e-16
log p-value:-3.826e+01
Information Content per bp:1.679
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.10%
Number of Background Sequences with motif348.8
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets49.8 +/- 21.0bp
Average Position of motif in Background48.5 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CACGNGGCGGGGCTGC
-AGGGGGCGGGGCTG-
 A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
A C G T C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CACGNGGCGGGGCTGC
--GGGGGCGGGGCC--
 A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CACGNGGCGGGGCTGC
--GGGGGCGGGGC---
 A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T

SP2/MA0516.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CACGNGGCGGGGCTGC
GGGNGGGGGCGGGGC---
 A C G T A C G T A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CACGNGGCGGGGCTGC--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Mycn/MA0104.3/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACGNGGCGGGGCTGC
CACGTGGC--------
 A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACGNGGCGGGGCTGC
CACGTGGN--------
 A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CACGNGGCGGGGCTGC
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

KLF5/MA0599.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CACGNGGCGGGGCTGC
---GGGGNGGGGC---
 A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
A C G T A C G T A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACGNGGCGGGGCTGC
CCACGTGGNN-------
 A C G T A G T C T G C A A T G C A T C G T G C A A T C G T A C G A G T C A T C G T A C G T A C G A T C G T G A C A G C T T A C G A T G C
T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T