Information for 13-GAAWKAGRCSASA (Motif 24)

A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A
Reverse Opposite:
A C G T T A G C A C G T A T C G A C T G A G C T A G T C A C G T G T A C G C T A A C G T A G C T A G T C
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 19.1bp
Average Position of motif in Background63.0 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAAWKAGRCSASA-
TGACANARRCCAGRC
 A C G T A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAAWKAGRCSASA
-AAYTAGGTCA--
 A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAAWKAGRCSASA--
GGGRAARRGRMCAGMTG
 A C G T A C G T A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAAWKAGRCSASA---
-----AAACCACAGAN
 A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAAWKAGRCSASA---
----NWAACCACADNN
 A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PAX4/MA0068.2/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GAAWKAGRCSASA
CTAATTAG------
 A C G T A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PH0036.1_Gsx2/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GAAWKAGRCSASA
AGGTTAATTAGCTGAT-
 A C G T A C G T A C G T A C G T A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A
T C G A T A C G C T A G A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G G A T C A G C T A T C G C T G A C A G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GAAWKAGRCSASA-
----NAAACCACAG
 A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A A C G T
A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

POU6F2/MA0793.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAAWKAGRCSASA
NTAATGAGCT----
 A C G T A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAAWKAGRCSASA
TAATTAGN-----
 A C T G C T G A C G T A C G A T A C T G C G T A A C T G C T G A A G T C T A C G C G T A A T C G C G T A
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T A C G T A C G T