Information for 9-KKCAAATATT (Motif 17)

C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
Reverse Opposite:
C G T A G C T A A C G T G T C A A C G T A C G T A C G T T C A G G T C A G T C A
p-value:1e-10
log p-value:-2.377e+01
Information Content per bp:1.704
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif74.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets48.4 +/- 26.6bp
Average Position of motif in Background55.1 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--KKCAAATATT--
NNTNNCAATATTAG
 A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--KKCAAATATT--
NNTNNCAATATTAG
 A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:KKCAAATATT
---AATTATT
 C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

FOXB1/MA0845.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--KKCAAATATT
TATGTAAATAT-
 A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--KKCAAATATT
TATGTAAATAT-
 A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-KKCAAATATT--
GGTTAAACATTAA
 A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T A C G T A C G T
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KKCAAATATT
WAAGTAAAYA--
 A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---KKCAAATATT
ATATGCAAAT---
 A C G T A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:KKCAAATATT--
GTTAATNATTAA
 C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T A C G T A C G T
C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---KKCAAATATT
TTATGCAAAT---
 A C G T A C G T A C G T C A G T C A G T A G T C G T C A C G T A C G T A C A G T G T C A C A G T A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T