Information for 12-GAMSAAAGGAARM (Motif 9)

A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
Reverse Opposite:
A C T G A G C T A G C T A C G T A G T C A G T C A C G T A C G T A C G T A T C G C A T G A C G T A G T C
p-value:1e-8
log p-value:-2.027e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.7 +/- 28.4bp
Average Position of motif in Background51.1 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0061.1_Sox11_1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GAMSAAAGGAARM
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0083.1_Tcf7_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GAMSAAAGGAARM
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAMSAAAGGAARM
GGAACAAAGR----
 A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GAMSAAAGGAARM
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GAMSAAAGGAARM
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GAMSAAAGGAARM
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0082.1_Tcf3_1/Jaspar

Match Rank:7
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GAMSAAAGGAARM
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAMSAAAGGAARM
AAAACAAAGG----
 A C G T A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAMSAAAGGAARM
GAACAATGGN---
 A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAMSAAAGGAARM
-AACAAAGG----
 A C T G C G T A G T A C A T G C C G T A C G T A C G T A A C T G A C T G C G T A C T G A C T G A G T A C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T