Information for 15-AATTAAGCCT (Motif 21)

C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
Reverse Opposite:
C G T A A C T G A T C G A G T C A C G T C A G T C T G A C G T A A C G T C G A T
p-value:1e-10
log p-value:-2.426e+01
Information Content per bp:1.855
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets58.2 +/- 21.3bp
Average Position of motif in Background72.6 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0175.1_Vax2/Jaspar

Match Rank:1
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------AATTAAGCCT
GTGCACTAATTAAGAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATTAAGCCT----
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATTAAGCCT----
NNNAATTAATCCCCNCN
 A C G T A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

LMX1B/MA0703.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATTAAGCCT
TTAATTAA----
 A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A C G T G A C T C G T A G C T A C G A T C G A T G C T A T C G A A C G T A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AATTAAGCCT----
GANNATTAATCCCTNNN
 A C G T A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PRRX1/MA0716.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATTAAGCCT
CTAATTAA----
 A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A G T C G A C T T C G A G T C A A G C T G A C T G C T A T C G A A C G T A C G T A C G T A C G T

SHOX/MA0630.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATTAAGCCT
NCAATTAN----
 A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A G T C G A T C G C T A G T C A A G C T A G C T C G T A C T G A A C G T A C G T A C G T A C G T

UNCX/MA0721.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATTAAGCCT
CTAATTAA----
 A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A G T C G A C T C T G A G T C A G A C T G A C T G C T A T C G A A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATTAAGCCT
CTAATTAA----
 A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AATTAAGCCT
TTAATTAA----
 A C G T A C G T C G T A C G T A C G A T A G C T G C T A G T C A A C T G A T G C A G T C C G A T
A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T A C G T A C G T