Information for 17-KTCTGTKACTCTA (Motif 20)

C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A
Reverse Opposite:
A C G T C G T A A T C G C T G A T A C G G A C T G T C A G T C A A G T C C T G A A T C G C G T A G T C A
p-value:1e-10
log p-value:-2.445e+01
Information Content per bp:1.794
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.1 +/- 25.5bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Spz1/MA0111.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:KTCTGTKACTCTA
-GCTGTTACCCT-
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A
A C G T A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:KTCTGTKACTCTA---
----AGGTCTCTAACC
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--KTCTGTKACTCTA--
NATTTAAGTACTTNAAA
 A C G T A C G T C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-KTCTGTKACTCTA
TGTCTGDCACCT--
 A C G T C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:5
Score:0.50
Offset:5
Orientation:forward strand
Alignment:KTCTGTKACTCTA
-----TGACTCA-
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A
A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:KTCTGTKACTCTA-----
------GGCTCYAKCAYC
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:KTCTGTKACTCTA
GSCTGTCACTCA-
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:8
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---KTCTGTKACTCTA-
NNGATCTAGAACCTNNN
 A C G T A C G T A C G T C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:KTCTGTKACTCTA
-NCTGTCAATCAN
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.49
Offset:4
Orientation:forward strand
Alignment:KTCTGTKACTCTA-
----RSCACTYRAG
 C A G T A C G T A T G C A G C T C T A G A C G T A C G T C T G A A T G C G A C T T A G C C G A T G T C A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G