Information for 5-GCACAATAGCTAA (Motif 8)

C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
Reverse Opposite:
A G C T G A C T C T G A A C T G A G T C G A C T C T G A G C A T C A G T C T A G C G A T C A T G G A T C
p-value:1e-9
log p-value:-2.170e+01
Information Content per bp:1.534
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 20.5bp
Average Position of motif in Background54.7 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0183.1_Sry_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCACAATAGCTAA
TCACGGAACAATAGGTG-
 A C G T A C G T A C G T A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCACAATAGCTAA
CTCACACAATGGCGC-
 A C G T A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCACAATAGCTAA-
ATGTACAGTAGCAAAG
 A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCACAATAGCTAA
RAACAATGGN---
 C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GCACAATAGCTAA
NNNNNGAACAATTGANN-
 A C G T A C G T A C G T A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCACAATAGCTAA
GAACAATGG----
 C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCACAATAGCTAA
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCACAATAGCTAA
GAACAATGGN---
 C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCACAATAGCTAA-
ATTTACAGTAGCAAAA
 A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCACAATAGCTAA
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T C T A G G T A C G C T A G A T C G T C A C G T A G A C T C T G A T C A G T G A C G A C T C T G A T C G A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T