Information for 9-CAGSGTCCAA (Motif 14)

A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A
Reverse Opposite:
A G C T A G C T A C T G A T C G G T C A A G T C A T G C G T A C A C G T T C A G
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.766
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif116.4
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets45.7 +/- 24.0bp
Average Position of motif in Background51.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CAGSGTCCAA---
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CAGSGTCCAA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGSGTCCAA----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGSGTCCAA----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CAGSGTCCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CAGSGTCCAA
----TGCCAA
 A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGSGTCCAA-
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGSGTCCAA----
----AGCCAATCGG
 A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGSGTCCAA
CAAAGGTCAG
 A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGSGTCCAA---
-ACTAGCCAATCA
 A G T C C G T A A C T G T A C G C T A G A C G T T A G C G T A C C T G A C T G A A C G T A C G T A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A