Information for 7-CCHTTGTTGGTTT (Motif 7)

G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A G T C A G T C C G T A C G T A A T G C C G T A C G T A C A T G A C T G A C T G
p-value:1e-12
log p-value:-2.904e+01
Information Content per bp:1.845
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 17.9bp
Average Position of motif in Background41.8 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxd3/MA0041.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCHTTGTTGGTTT
-GAATGTTTGTTT
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCHTTGTTGGTTT--
NTNTTGTTGTTTGTN
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCHTTGTTGGTTT-
NCNTTTGTTATTTNN
 A C G T G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCHTTGTTGGTTT
CCTTTGTT-----
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCHTTGTTGGTTT
NCCATTGTTC----
 A C G T G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCHTTGTTGGTTT
CCWTTGTY-----
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCHTTGTTGGTTT
CCATTGTTYB---
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:8
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCHTTGTTGGTTT
----TGTCGGTT-
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CCHTTGTTGGTTT
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CCHTTGTTGGTTT----
-------TGGTTTCAGT
 G T A C G T A C G A T C G C A T A C G T A T C G A C G T A C G T C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T