Information for 4-GGTGGCAGCA (Motif 2)

A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A
Reverse Opposite:
A C G T C T A G A G T C A C G T C T A G T G A C A G T C G T C A A G T C A G T C
p-value:1e-40
log p-value:-9.359e+01
Information Content per bp:1.716
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif10.84%
Number of Background Sequences with motif844.3
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets49.7 +/- 18.6bp
Average Position of motif in Background49.7 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGCA
GGTTGGCAT--
 A C G T A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGCA-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGTGGCAGCA----
---GTCAGCANNTN
 A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGCA
TGAGTCAGCA
 A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGCA
TNNGGGCAG--
 A C G T A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGTGGCAGCA---
ADGGYAGYAGCATCT
 A C G T A C G T A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A A C G T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGCA--
SCTGTCARCACC
 A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A A C G T A C G T
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGCA
VGCTGWCAVB-
 A C G T A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGCA
RHTGWCAR--
 A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGTGGCAGCA----
--NGTCAGCANTTT
 A C T G T C A G C A G T C T A G A C T G G A T C C G T A C T A G G A T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T