Information for 10-TCGGCTCAGGTCTAAG (Motif 31)

A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C T G C G T A A C T G A G T C A G T C A C T G C G T A
p-value:1e-7
log p-value:-1.621e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 37.6bp
Average Position of motif in Background45.6 +/- 3.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----TCGGCTCAGGTCTAAG
AGAGCGGGGTCAAGTA----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:2
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----TCGGCTCAGGTCTAAG
CGCGCCGGGTCACGTA----
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.48
Offset:0
Orientation:forward strand
Alignment:TCGGCTCAGGTCTAAG
GGGGCCGAGGCCTG--
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:4
Score:0.48
Offset:6
Orientation:forward strand
Alignment:TCGGCTCAGGTCTAAG----
------GAGGTCAAAGGTCA
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TCGGCTCAGGTCTAAG---
-------ACATCAAAGGNA
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:TCGGCTCAGGTCTAAG
-NGGATTAN-------
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.47
Offset:7
Orientation:forward strand
Alignment:TCGGCTCAGGTCTAAG-
-------ACATCAAAGG
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:8
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-TCGGCTCAGGTCTAAG
NTNGCCTCAGGCNNN--
 A C G T A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.47
Offset:0
Orientation:forward strand
Alignment:TCGGCTCAGGTCTAAG
TCACCTCTGGGCAG--
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.47
Offset:7
Orientation:forward strand
Alignment:TCGGCTCAGGTCTAAG---
-------AGGTCAAGGTCA
 A C G T A G T C A C T G A C T G A G T C A C G T A G T C C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A