Information for 18-AATRTGGGTATTT (Motif 25)

C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T
Reverse Opposite:
C G T A T C G A G C T A A G C T C G T A A T G C G T A C G T A C C G T A A G C T C G T A A G C T C G A T
p-value:1e-10
log p-value:-2.370e+01
Information Content per bp:1.697
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.2 +/- 28.3bp
Average Position of motif in Background55.4 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F3/MA0788.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AATRTGGGTATTT
ATTATGCTAATTT
 C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AATRTGGGTATTT
CTAATATTGCTAAA-
 A C G T A C G T C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AATRTGGGTATTT
CTAATATTGCTAAA-
 A C G T A C G T C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AATRTGGGTATTT-----
--TATTGGTAATTACCTT
 C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

ONECUT3/MA0757.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AATRTGGGTATTT-
NTTATTGATTTTTT
 C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AATRTGGGTATTT-
TNNATTATGCATANNTT
 A C G T A C G T A C G T C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AATRTGGGTATTT
AATATGCAAATT-
 C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AATRTGGGTATTT
CAATGCATTGTGGGTA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AATRTGGGTATTT--
-----GGGAATTTCC
 C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AATRTGGGTATTT-----
------KCTATTTTTRGH
 C G T A C T G A A C G T C T G A A C G T C A T G A C T G A T C G C G A T T C G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C