Information for 6-CCTGYCTGAMAGGGGA (Motif 23)

A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
Reverse Opposite:
C G A T A G T C G T A C T A G C T A G C A G C T C A G T A G C T A T G C C G T A A C T G C T G A G T A C C G T A A C T G A T C G
p-value:1e-9
log p-value:-2.111e+01
Information Content per bp:1.759
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.2 +/- 15.7bp
Average Position of motif in Background39.6 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTGYCTGAMAGGGGA
-CTGTCTGTCACCT--
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCTGYCTGAMAGGGGA
--TGAGTGACAGSC--
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTGYCTGAMAGGGGA
-NTGATTGACAGN---
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTGYCTGAMAGGGGA
-BTGABTGACAGS---
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCTGYCTGAMAGGGGA---
SMCAGTCWGAKGGAGGAGGC
 A C G T A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGYCTGAMAGGGGA
--TGTCTGDCACCT--
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTGYCTGAMAGGGGA
---VGCTGWCAVB---
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CCTGYCTGAMAGGGGA
-----TTGACAGC---
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCTGYCTGAMAGGGGA
NCTTCCNGGAAGNN--
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCTGYCTGAMAGGGGA
-CTGTCTGG-------
 A T G C A G T C C G A T A C T G A G C T A G T C C G A T A T C G T C G A G T C A C T G A A T C G A C T G C A T G A C T G G C T A
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T