Information for 16-GCGCTSAGCCAAK (Motif 19)

C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
Reverse Opposite:
T G C A A G C T C G A T A C T G A C T G A G T C G A C T A T G C G C T A T C A G A G T C C T A G G A T C
p-value:1e-9
log p-value:-2.156e+01
Information Content per bp:1.721
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif52.9
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets48.2 +/- 26.0bp
Average Position of motif in Background51.4 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:GCGCTSAGCCAAK
------TGCCAA-
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCGCTSAGCCAAK
TGGCACCATGCCAA-
 A C G T A C G T C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GCGCTSAGCCAAK
----CGTGCCAAG
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCGCTSAGCCAAK
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GCGCTSAGCCAAK---
------AGCCAATCGG
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCGCTSAGCCAAK--
---ACTAGCCAATCA
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCGCTSAGCCAAK-
----GGTGCCAAGT
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCGCTSAGCCAAK
TGGCAGNCTGCCAG-
 A C G T A C G T C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCGCTSAGCCAAK
----BCAGACWA-
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGCTSAGCCAAK---
-AAATGGACCAATCAG
 C A T G G A T C T C A G A G T C C G A T A T C G C G T A A C T G G T A C G T A C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G