Information for 3-TGMCCTTGGCCCTGGW (Motif 6)

A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
Reverse Opposite:
G C A T T A G C T G A C C T G A C T A G A C T G C T A G G A T C G A T C C G T A C T G A C T A G C T A G C A G T A G T C G T C A
p-value:1e-12
log p-value:-2.886e+01
Information Content per bp:1.682
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif111.4
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets53.4 +/- 23.9bp
Average Position of motif in Background49.4 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGMCCTTGGCCCTGGW
TGACCTTGACCT----
 A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGMCCTTGGCCCTGGW
TGACCTTGACCT----
 A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGMCCTTGGCCCTGGW
GCTGACCTTGAACTN---
 A C G T A C G T A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGMCCTTGGCCCTGGW
TGACCTTTGCCCTA--
 A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGMCCTTGGCCCTGGW
TGACCTTGAV------
 A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGMCCTTGGCCCTGGW
TGACCTTGAN------
 A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGMCCTTGGCCCTGGW
BNTGDCCTTG--------
 A C G T A C G T A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGMCCTTGGCCCTGGW
NTGACCTTGA-------
 A C G T A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGMCCTTGGCCCTGGW
TGACCTTTGCCCTAN-
 A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGMCCTTGGCCCTGGW
NATGACCTTGA-------
 A C G T A C G T A C G T A C T G G T C A G A T C G A T C A G C T C G A T C A T G C T A G A G T C G T A C G A T C A G C T A C T G A T C G C G T A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T