Information for 11-AGTCGGCTTC (Motif 17)

C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
Reverse Opposite:
C T A G C G T A C T G A A C T G A G T C G T A C A C T G C G T A A G T C A C G T
p-value:1e-7
log p-value:-1.786e+01
Information Content per bp:1.915
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif35.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets54.2 +/- 26.6bp
Average Position of motif in Background55.8 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AGTCGGCTTC-
-----GCTTCC
 C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTCGGCTTC
TGAGTCAGCA--
 A C G T A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

PROX1/MA0794.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGTCGGCTTC
CAAGACGCCTTA
 A C G T A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGTCGGCTTC
VBSYGTCTGG---
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTCGGCTTC
TWGTCTGV---
 A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGTCGGCTTC
CTGTCTGG---
 A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTCGGCTTC--
NGTCAGCANTTT
 C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C A C G T A C G T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGTCGGCTTC
----NGCTN-
 C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------AGTCGGCTTC
NTNNNAGGAGTCTCNTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGTCGGCTTC----
AAGTCAGCANTTTTN
 A C G T C G T A A C T G A C G T A G T C C A T G A C T G A G T C A G C T A C G T A G T C A C G T A C G T A C G T A C G T
C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A