Information for 9-CTAGCCATAT (Motif 18)

A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T
Reverse Opposite:
C G T A G A C T C G T A C G A T A C T G C T A G A G T C A C G T T G C A A C T G
p-value:1e-8
log p-value:-1.961e+01
Information Content per bp:1.858
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets42.2 +/- 33.2bp
Average Position of motif in Background49.0 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROD2/MA0668.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTAGCCATAT---
---GCCATATGGT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T

Twist2/MA0633.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTAGCCATAT---
---ACCATATGTT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTAGCCATAT---
---GACATATGTT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

Bhlha15/MA0607.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTAGCCATAT--
----CCATATGT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T

Atoh1/MA0461.2/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTAGCCATAT---
---ANCATATGTT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTAGCCATAT
BCAGACWA--
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTAGCCATAT
CGTCTAGACA---
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

Neurog1/MA0623.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTAGCCATAT---
---ACCATATGGT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T

OLIG3/MA0827.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTAGCCATAT---
---ACCATATGTT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T

BHLHE22/MA0818.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTAGCCATAT---
---ACCATATGTT
 A G T C A C G T C G T A A C T G A G T C A G T C C G T A G C A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T