Information for 4-KGCMCAAGCGTGACCT (Motif 7)

C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
Reverse Opposite:
C T G A C T A G T A C G A C G T A G T C C G T A T G A C C A T G A G T C C G A T A C G T A T C G A C G T A T C G A T G C G T A C
p-value:1e-13
log p-value:-3.147e+01
Information Content per bp:1.745
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.5 +/- 24.9bp
Average Position of motif in Background63.3 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.63
Offset:9
Orientation:reverse strand
Alignment:KGCMCAAGCGTGACCT-
---------GTGACCTT
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:KGCMCAAGCGTGACCT
-------NCGTGACN-
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--KGCMCAAGCGTGACCT
NGCANTCATGCGTGACG-
 A C G T A C G T C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.60
Offset:6
Orientation:forward strand
Alignment:KGCMCAAGCGTGACCT
------TGCGTG----
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.60
Offset:10
Orientation:reverse strand
Alignment:KGCMCAAGCGTGACCT--
----------TGACCTYA
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:KGCMCAAGCGTGACCT
-----AAGCTTG----
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.59
Offset:10
Orientation:reverse strand
Alignment:KGCMCAAGCGTGACCT----
----------TGACCTTGAT
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.58
Offset:10
Orientation:reverse strand
Alignment:KGCMCAAGCGTGACCT
----------TGACCT
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--KGCMCAAGCGTGACCT
TGCAGTCATGCGTGACG-
 A C G T A C G T C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:9
Orientation:forward strand
Alignment:KGCMCAAGCGTGACCT---
---------NTGACCTTGA
 C A T G A T C G A T G C G T C A A T G C G T C A C G T A A C T G G A T C A C T G A C G T A C T G G T C A A G T C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A