Information for 4-NTGGMCTYTGCHC (Motif 3)

A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C
Reverse Opposite:
T A C G C G A T A T C G A G T C C G T A T C A G C T G A C T A G A C T G A G T C A G T C G T C A T G A C
p-value:1e-24
log p-value:-5.535e+01
Information Content per bp:1.616
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif10.98%
Number of Background Sequences with motif1458.5
Percentage of Background Sequences with motif3.21%
Average Position of motif in Targets46.5 +/- 23.0bp
Average Position of motif in Background50.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC---
-TGGACTTTGNNCTCN
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC----
-TGGACTTTGNNCTNTG
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC
CTGACCTTTG---
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC--
-TGACCTTTGCCCTA
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC---
-TGACCTTTGCCCTAN
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:NTGGMCTYTGCHC--
-TGACCTTTGCCCCA
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC--
-TGACCTTTGACCTC
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T
A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-NTGGMCTYTGCHC--
ATTGGACTTTGACCCC
 A C G T A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:NTGGMCTYTGCHC---
-TGACCTCTGACCCCN
 A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C A C G T A C G T A C G T
A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---NTGGMCTYTGCHC
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T A C T G A C G T A C T G T C A G G T A C G A T C A G C T A G T C A C G T A C T G A T G C G C T A A T G C
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A