Information for 14-AGCYTTTAGTCRKARC (Motif 9)

C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
Reverse Opposite:
T C A G A G T C C G A T G T A C A G C T T C A G T C G A A G T C A C G T C T G A C G T A C T G A C T A G A C T G A G T C A G C T
p-value:1e-129
log p-value:-2.980e+02
Information Content per bp:1.657
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif16.23%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets49.3 +/- 20.8bp
Average Position of motif in Background39.8 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGCYTTTAGTCRKARC
ANCGTTTANN------
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCYTTTAGTCRKARC
NNCAATTANN------
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCYTTTAGTCRKARC
AAACMATTAN-------
 A C G T C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGCYTTTAGTCRKARC
-BCMATTAG-------
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGCYTTTAGTCRKARC
RGCCATYAATCA----
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGCYTTTAGTCRKARC
NTGCCCTTGGGCGN---
 A C G T C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCYTTTAGTCRKARC
GGCCATTAAC------
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCYTTTAGTCRKARC
ACCGATTAG-------
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGCYTTTAGTCRKARC
-CCTTTTATAGNC---
 C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCYTTTAGTCRKARC
ACAAGCAATTAATGAAT--
 A C G T A C G T A C G T C T G A C T A G G T A C A G T C A G C T A C G T A G C T C G T A T C A G A G C T A G T C C T G A C A T G G C T A T C A G A G T C
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T A C G T