Information for 3-TRTTTRCTHA (Motif 2)

A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
Reverse Opposite:
C G A T C T G A C G T A T C A G A G T C C G T A C G T A C G T A A G T C C T G A
p-value:1e-38
log p-value:-8.874e+01
Information Content per bp:1.680
Number of Target Sequences with motif136.0
Percentage of Target Sequences with motif23.41%
Number of Background Sequences with motif1164.8
Percentage of Background Sequences with motif6.49%
Average Position of motif in Targets47.8 +/- 26.2bp
Average Position of motif in Background51.0 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TRTTTRCTHA
TRTTTACTTW
 A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCTHA
TGTTTACTTT
 A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCTHA
TGTTTACTTT
 A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----TRTTTRCTHA-
TCCATGTTTACTTTG
 A C G T A C G T A C G T A C G T A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTRCTHA-----
NSTGTTTRCWCAGBNNN
 A C G T A C G T A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TRTTTRCTHA
TGTTTATTT-
 A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T

FOXD2/MA0847.1/Jaspar

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCTHA
TGTTTAC---
 A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTRCTHA
TTTGTTTACTTA
 A C G T A C G T A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:9
Score:0.87
Offset:0
Orientation:forward strand
Alignment:TRTTTRCTHA--
TGTTTACTTAGG
 A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A A C G T A C G T
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TRTTTRCTHA--
BSNTGTTTACWYWGN
 A C G T A C G T A C G T A G C T T C A G A C G T C G A T A C G T C T A G A G T C G C A T G A C T C G T A A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G