Information for 5-RWCCCAGAKGYCA (Motif 4)

C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C T G A A G T C G T A C C G A T A G T C A C G T A C T G A C T G A T C G C G A T A G T C
p-value:1e-12
log p-value:-2.947e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.0 +/- 13.9bp
Average Position of motif in Background64.5 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:RWCCCAGAKGYCA-
----CAAAGGTCAG
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:RWCCCAGAKGYCA
--TCCAGATGTT-
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A
A C G T A C G T A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RWCCCAGAKGYCA---
AAGGCCAGATGGTCCGG
 A C G T C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:RWCCCAGAKGYCA----
-TCTCAAAGGTCACCTG
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.65
Offset:5
Orientation:forward strand
Alignment:RWCCCAGAKGYCA
-----AGRGGTCA
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:RWCCCAGAKGYCA----
----CAAAGGTCAAGGG
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:RWCCCAGAKGYCA----
-TCTCAAAGGTCACGAG
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RWCCCAGAKGYCA
ATGCCAGACN---
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RWCCCAGAKGYCA
ATTTCCCAGVAKSCY
 A C G T A C G T C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:5
Orientation:forward strand
Alignment:RWCCCAGAKGYCA
-----TRAGGTCA
 C T A G C G T A A T G C A G T C A G T C C G T A A C T G C G T A A C T G C T A G A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A