Information for 2-CAAGGAGAAAATT (Motif 5)

G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
Reverse Opposite:
C T G A G C T A A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.488e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.8 +/- 25.5bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAAGGAGAAAATT
GAAAGTGAAAGT-
 G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAGGAGAAAATT
CAAGGHCANV---
 G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAAGGAGAAAATT
--AGGTGTTAAT-
 G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAAAATT
BTCAAGGTCA-----
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

IRF7/MA0772.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAAAATT
ACGAAAGCGAAAGT-
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
G T C A T G A C A C T G T G C A C G T A G T C A T C A G G A T C C T A G G T C A T C G A G C T A T C A G G C A T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAAGGAGAAAATT-
AGAAAGTGAAAGTGA
 A C G T G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T A C G T
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAAGGAGAAAATT
TACTGGAAAAAAAA
 A C G T G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAAGGAGAAAATT
NTCAAGGTCA-----
 A C G T A C G T G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAAGGAGAAAATT
GAAAGTGAAAGT-
 G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAAGGAGAAAATT
TCAAGGTCATA---
 A C G T G T A C C G T A C G T A A C T G A C T G C G T A A C T G C G T A C G T A C G T A C G T A C A G T A G C T
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T A C G T A C G T