Information for 4-CKCTAGCCAG (Motif 12)

T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G
Reverse Opposite:
A G T C A C G T C T A G A C T G G A T C G A C T C T G A A C T G T G A C A C T G
p-value:1e-10
log p-value:-2.313e+01
Information Content per bp:1.745
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif364.9
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets44.8 +/- 28.7bp
Average Position of motif in Background48.3 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CKCTAGCCAG---
---ATGCCAGACN
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CKCTAGCCAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CKCTAGCCAG
----TGCCAA
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CKCTAGCCAG---
-ACTAGCCAATCA
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T A C G T A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CKCTAGCCAG-
--CGTGCCAAG
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CKCTAGCCAG
--BCAGACWA
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CKCTAGCCAG-
-GTTAACTAGN
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CKCTAGCCAG---
---TGCCCAGNHW
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

GFX(?)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CKCTAGCCAG---
-TCTCGCGAGAAT
 T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G A C G T A C G T A C G T
A C G T G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CKCTAGCCAG
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A C G T T G A C A C T G A G T C A G C T C T G A C T A G A G T C G A T C C G T A C T A G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G