Information for 3-AACAMAGTVATMAAAA (Motif 10)

C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T A C G T C A G T C G T A A C G T A G T C G T C A G T A C A G C T C A T G A C G T A C T G A G C T C G A T
p-value:1e-10
log p-value:-2.355e+01
Information Content per bp:1.741
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets40.4 +/- 22.0bp
Average Position of motif in Background53.2 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA10/MA0899.1/Jaspar

Match Rank:1
Score:0.68
Offset:5
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA
-----GGTAATAAAAA
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA---
---AGAGCCATAAAATTCG
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.65
Offset:6
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA
------GCAATAAAAA
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.64
Offset:6
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA
------GTCATAAAAN
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA--
--TAAAGTCGTAAAACAT
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A A C G T A C G T
A C G T A C G T G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA
----AAGCCATAAAA-
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A
A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA--
--TAAGGTAATAAAATTA
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A A C G T A C G T
A C G T A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA
------GTCGTAAAAT
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA--
--TAAAGTCGTAAAATAG
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A A C G T A C G T
A C G T A C G T G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AACAMAGTVATMAAAA----
---ACGGCCATAAAATTAAT
 C G T A C T G A G T A C G T C A G T A C C T G A A C T G A C G T T A C G G T C A A C G T G T C A C G T A G T C A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T