Information for 1-GACTAWTCCC (Motif 1)

T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C
Reverse Opposite:
C T A G C T A G C T A G C T G A G C A T A C G T G C T A C T A G C G A T A G T C
p-value:1e-15
log p-value:-3.459e+01
Information Content per bp:1.731
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif187.8
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets52.0 +/- 27.2bp
Average Position of motif in Background49.0 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---GACTAWTCCC----
GANNATTAATCCCTNNN
 A C G T A C G T A C G T T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---GACTAWTCCC----
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GACTAWTCCC
-CTTAATCCC
 T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GACTAWTCCC----
NNNAATTAATCCCCNCN
 A C G T A C G T A C G T T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T A C G T A C G T A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.75
Offset:3
Orientation:forward strand
Alignment:GACTAWTCCC-
---TAATCCCN
 T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GACTAWTCCC
--TTAATCCC
 T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C
A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GACTAWTCCC
--YTAATCCY
 T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

PH0015.1_Crx/Jaspar

Match Rank:8
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GACTAWTCCC-----
AGGCTAATCCCCAANG
 A C G T T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GACTAWTCCC-
-NYTAATCCYB
 T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GACTAWTCCC-
-GCTAATCCCC
 T C A G C G T A G A T C C G A T C G T A C G T A A G C T A G T C A G T C A G T C A C G T
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C