Information for 3-TRTTTRCWCAGSA (Motif 3)

C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
Reverse Opposite:
G A C T A T C G A G T C C G A T A T C G C G A T C T A G A G T C C G T A G T C A C G T A A G T C C G T A
p-value:1e-18
log p-value:-4.353e+01
Information Content per bp:1.721
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif169.0
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets38.8 +/- 25.8bp
Average Position of motif in Background49.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTRCWCAGSA--
NSTGTTTRCWCAGBNNN
 A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:TRTTTRCWCAGSA
TGTTTACTTAGG-
 C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:3
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---TRTTTRCWCAGSA
BSNTGTTTACWYWGN-
 A C G T A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----TRTTTRCWCAGSA
TCCATGTTTACTTTG--
 A C G T A C G T A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:5
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TRTTTRCWCAGSA
TRTTTACTTW---
 C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TRTTTRCWCAGSA
CNTGTTTACATA---
 A C G T A C G T C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCWCAGSA
TGTTTACTTT---
 C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCWCAGSA
TGTTTACTTT---
 C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T

FOXD2/MA0847.1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCWCAGSA
TGTTTAC------
 C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

FOXI1/MA0042.2/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCWCAGSA
TGTTTAC------
 C G A T T C A G A C G T A C G T A C G T C T A G A G T C G C T A A T G C C G T A A C T G T A G C C T G A
A G C T C T A G G C A T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T