Information for 11-CAAGAGGTGCAAA (Motif 17)

A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A G T C C G T A A G T C A G T C A C G T A G T C A C G T A C G T A C T G
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.2 +/- 20.1bp
Average Position of motif in Background23.2 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CAAGAGGTGCAAA
ATGCAACAGGTGG---
 A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAAGAGGTGCAAA--
ATCCACAGGTGCGAAAA
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CAAGAGGTGCAAA-
----AGGTGTTAAT
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

SCRT1/MA0743.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAAGAGGTGCAAA
GAGCAACAGGTGGTT-
 A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAAGAGGTGCAAA-
----AGGTGTGAAA
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CAAGAGGTGCAAA
----AGGTGTCA-
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAAGAGGTGCAAA-
---AAGGTGTGAAA
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAAGAGGTGCAAA
---AAGGTGTKAA
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A
A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

ID4/MA0824.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAAGAGGTGCAAA
-GACAGGTGTN--
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A
A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAAGAGGTGCAAA----
GAAAAGGTGTGAAAATT
 A G T C C G T A C G T A A C T G C G T A A C T G A C T G A C G T A C T G A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T