Information for 12-CCAGACCGTACAG (Motif 36)

A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T C G T A A G T C A C T G A C T G A C G T A G T C A C G T A C T G A C T G
p-value:1e-5
log p-value:-1.256e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.0 +/- 15.0bp
Average Position of motif in Background63.4 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACCGTACAG
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAGACCGTACAG
CCAGACAG-----
 A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACCGTACAG
ATGCCAGACN------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCAGACCGTACAG
CCAGACRSVB---
 A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCAGACCGTACAG
BCAGACWA-----
 A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CCAGACCGTACAG
--AAACCGCAAA-
 A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCAGACCGTACAG
GVACAGNMTGTYCTB
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CCAGACCGTACAG-
--------CACAGN
 A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CCAGACCGTACAG
GGCCACACCCAN---
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T

HSF4/MA0771.1/Jaspar

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--CCAGACCGTACAG
TTCTAGAACGTTC--
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A A G T C A G T C A C T G A C G T C G T A A G T C C G T A A C T G
C G A T C A G T T A G C A G C T T C G A A T C G G C T A G C T A A G T C T C A G C G A T C G A T A G T C A C G T A C G T