Information for 3-RTCAGGAGACAGGMTC (Motif 3)

C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
Reverse Opposite:
T A C G G T C A A C G T A T G C A G T C A G C T A T C G A C G T A G T C A C G T A T G C A G T C A C G T A T C G C T G A G A T C
p-value:1e-16
log p-value:-3.691e+01
Information Content per bp:1.757
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.2 +/- 19.0bp
Average Position of motif in Background56.7 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:RTCAGGAGACAGGMTC
----CCAGACAG----
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:RTCAGGAGACAGGMTC
---AGGTGNCAGACAG
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:RTCAGGAGACAGGMTC
-------CACAGN---
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RTCAGGAGACAGGMTC
NTNNNAGGAGTCTCNTN-
 A C G T A C G T C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:RTCAGGAGACAGGMTC
----CCAGACRSVB--
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RTCAGGAGACAGGMTC
---AGGAAACAGCTG-
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:RTCAGGAGACAGGMTC
----BCAGACWA----
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RTCAGGAGACAGGMTC
---AGGTGHCAGACA-
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:RTCAGGAGACAGGMTC--
----GGAGAAAGGTGCGA
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Foxo1/MA0480.1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:RTCAGGAGACAGGMTC
---TGTAAACAGGA--
 C T A G A G C T A T G C G T C A A C T G A T C G C G T A A C T G T G C A A T G C C T G A A C T G T A C G T G C A C A G T A T G C
A C G T A C G T A C G T C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A A C G T A C G T