Information for 3-CAGAGAGRAAAGTCAG (Motif 6)

A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
Reverse Opposite:
G T A C A C G T T A C G G T C A A G T C A C G T A C G T A G C T A G T C G T A C A G C T A G T C A C G T A G T C A C G T C T A G
p-value:1e-16
log p-value:-3.697e+01
Information Content per bp:1.745
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets66.8 +/- 22.5bp
Average Position of motif in Background46.8 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf7/MA0769.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG
-AAAGATCAAAGG---
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG
-AAAGATCAAAGGGTT
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG
-AAAGATCAAAGGAA-
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAGAGAGRAAAGTCAG
-AGAAACGAAAGT---
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG
---ACATCAAAGGNA-
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAGAGAGRAAAGTCAG-
NANAGATCAAAGGGNNN
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAGAGAGRAAAGTCAG-
NNNAGATCAAAGGANNN
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG
CANAGNNCAAAGTCCA
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG-
TATAGATCAAAGGAAAA
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGAGAGRAAAGTCAG-
TATAGATCAAAGGAAAA
 A G T C C G T A C T A G G T C A A C T G T C G A A C T G T C A G C T G A C G T A C G T A A C T G C A G T A G T C T C G A C A T G A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A