Information for 13-CTGCCAGAGGGCACAT (Motif 20)

A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
Reverse Opposite:
T C G A A C G T A T C G A C G T C T A G A T G C A G T C G T A C A C G T A T G C A C G T A C T G A T C G T A G C C T G A C T A G
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.717
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.3 +/- 24.2bp
Average Position of motif in Background37.3 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C/MA0524.2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGCCAGAGGGCACAT
-TGCCCCAGGGCA---
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGCCAGAGGGCACAT
CCGCCCAAGGGCAG--
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGCCAGAGGGCACAT
-TGCCCCAGGGCA---
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGCCAGAGGGCACAT
-TGCCCNGGGGCA---
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGCCAGAGGGCACAT
TTGCCCTAGGGCAT--
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGAGGGCACAT---
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTGCCAGAGGGCACAT
--GCCTCAGGGCAT--
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGCCAGAGGGCACAT
--AACAGATGGC----
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCAGAGGGCACAT-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CTGCCAGAGGGCACAT
----CAAAGGTCAG--
 A G T C A G C T A T C G A T G C A G T C G T C A T A C G G T C A A C T G A C T G A T C G A G T C T C G A T A G C T G C A A G C T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T