Information for 1-GRMCTTTGDMCTKTGC (Motif 3)

C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
Reverse Opposite:
T A C G T A G C T G C A T G A C C T G A A C T G C A T G G C T A T G A C G T C A T G C A C T G A T A C G A C G T G A C T G T A C
p-value:1e-24
log p-value:-5.704e+01
Information Content per bp:1.566
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif9.97%
Number of Background Sequences with motif861.4
Percentage of Background Sequences with motif2.69%
Average Position of motif in Targets49.8 +/- 26.1bp
Average Position of motif in Background49.5 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GRMCTTTGDMCTKTGC
TGGACTTTGNNCTNTG-
 A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GRMCTTTGDMCTKTGC
TGGACTTTGNNCTCN--
 A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:GRMCTTTGDMCTKTGC
-----CTGACCTTTG-
 C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GRMCTTTGDMCTKTGC
--CCTTTGATCTTT--
 C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
A C G T A C G T A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GRMCTTTGDMCTKTGC
GTTGACCTTTGACCTTT--
 A C G T A C G T A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GRMCTTTGDMCTKTGC
ATTGGACTTTGACCCC---
 A C G T A C G T A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GRMCTTTGDMCTKTGC
TGACCTTTGACCTC---
 A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GRMCTTTGDMCTKTGC
TGACCTTTGACCTN---
 A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GRMCTTTGDMCTKTGC
AACCCTTTGATCTTT--
 A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
C G T A G C T A A G T C A G T C A G T C G A C T A G C T C G A T A T C G C G T A G C A T A T G C G A C T G A C T A G C T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GRMCTTTGDMCTKTGC
TGACCTTTGACCCC---
 A C G T C A T G C T G A T G C A A T G C G A C T A C G T A C G T A C T G C G A T G T A C T A G C G A C T A C T G A C G T A T C G A T G C
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T A C G T