Information for 2-RRACTACAWYTCCCAN (Motif 3)

T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C
Reverse Opposite:
C A T G G A C T A C T G C T A G C T A G C G T A C T G A C G A T A C G T A C T G A G C T C T G A C T A G A C G T A G T C A G C T
p-value:1e-36
log p-value:-8.414e+01
Information Content per bp:1.686
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.08%
Number of Background Sequences with motif164.8
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets49.6 +/- 24.9bp
Average Position of motif in Background45.7 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:2
Orientation:forward strand
Alignment:RRACTACAWYTCCCAN
--ACTACAATTCCC--
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C
A C G T A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.87
Offset:1
Orientation:forward strand
Alignment:RRACTACAWYTCCCAN-----
-RACTACAACTCCCAGVAKGC
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.86
Offset:1
Orientation:forward strand
Alignment:RRACTACAWYTCCCAN-----
-AACTACAATTCCCAGAATGC
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.64
Offset:7
Orientation:forward strand
Alignment:RRACTACAWYTCCCAN-
-------HTTTCCCASG
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.60
Offset:7
Orientation:forward strand
Alignment:RRACTACAWYTCCCAN------
-------ATTTCCCAGVAKSCY
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PB0098.1_Zfp410_1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:RRACTACAWYTCCCAN----
---NNNTCCATCCCATAANN
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:RRACTACAWYTCCCAN
----TKCTGTTCCA--
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C
A C G T A C G T A C G T A C G T A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:RRACTACAWYTCCCAN
-ASTTTCACTTCC---
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C
A C G T C T G A A T G C G C A T G A C T G A C T A G T C G C T A A T G C G C A T C G A T A G T C G A T C A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RRACTACAWYTCCCAN
NNGGCGACACCTCNNN-
 A C G T T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:RRACTACAWYTCCCAN-
-------NYTTCCCGCC
 T C G A T C A G T C G A A G T C A G C T T C G A A G T C T G C A G C T A G A C T C G A T A G T C A G T C A G T C C T G A G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C