Information for 6-KATMAATRRAARKGTG (Motif 5)

A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
Reverse Opposite:
A G T C G C T A G T A C G T A C A G T C A C G T A C G T A G C T A G C T C G T A A C G T A C G T A C G T C T G A A C G T G T C A
p-value:1e-13
log p-value:-3.110e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.3 +/- 22.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-KATMAATRRAARKGTG
CTACCAATAAAATTCT-
 A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--KATMAATRRAARKGTG
TCTAAAAATAGA------
 A C G T A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--KATMAATRRAARKGTG
ACTATGAATGAATGAT--
 A C G T A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--KATMAATRRAARKGTG
ACTATAAATAGA------
 A C G T A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KATMAATRRAARKGTG
CCATCAATCAAA-----
 A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KATMAATRRAARKGTG
-AACAATGGTAGTGTT
 A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---KATMAATRRAARKGTG
HNRAATCAAT---------
 A C G T A C G T A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KATMAATRRAARKGTG
-AGAAACGAAAGT---
 A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:KATMAATRRAARKGTG
-AACAATGNTATTGTT
 A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KATMAATRRAARKGTG
GTATAAAAGGCGGGG--
 A C G T A C G T C G T A A G C T G T C A C G T A C G T A A C G T C T G A C T G A C G T A C G T A C T A G A C T G A C T G C G A T A C T G
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T A C G T