Information for 11-CAGGTTACTG (Motif 13)

G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A T C A G C A G T C T G A G C T A A G T C G A T C A G C T C T A G
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.831
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif155.8
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets31.7 +/- 19.8bp
Average Position of motif in Background50.6 +/- 35.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAGGTTACTG
GKVTCADRTTWC--
 A C G T A C G T A C G T A C G T G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGGTTACTG----
NAGGTCANTGACCT
 G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G A C G T A C G T A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGGTTACTG
VCAGGTRDRY-
 A C G T G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAGGTTACTG-------
-GGGTTACTANAGGTCA
 G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGGTTACTG-----
CNNNGCTACTGTANNN
 A C G T G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTTACTG
GKMTCADRTTWC--
 A C G T A C G T A C G T A C G T G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGGTTACTG
AAGGTCAC--
 G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGGTTACTG-
CAGGTAAGTAT
 G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGGTTACTG-----
GTAGGTCACTGGGTCA
 A C G T G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGGTTACTG
AACAGGTGT---
 A C G T A C G T G A T C C T G A C T A G A C T G C G A T A G C T G T C A A G T C A C G T A T C G
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T