Information for 12-ACAAGGGGCATAG (Motif 13)

C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
Reverse Opposite:
A G T C A C G T C T G A A C G T C T A G A G T C A G T C A G T C A G T C A C G T A C G T A C T G A C G T
p-value:1e-7
log p-value:-1.837e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.2 +/- 13.0bp
Average Position of motif in Background48.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACAAGGGGCATAG
AACAAAGG------
 A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----ACAAGGGGCATAG
NNTNNACAATGGGANNN-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ACAAGGGGCATAG
--AAGAGGATTAG
 C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ACAAGGGGCATAG
GAACAATGGN-----
 A C G T A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACAAGGGGCATAG--
NNNNTTGGGCACNNCN
 A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-ACAAGGGGCATAG
RACAAWGG------
 A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------ACAAGGGGCATAG
NNAGGGACAAGGGCNC---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ACAAGGGGCATAG
VRRACAAWGG------
 A C G T A C G T A C G T C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACAAGGGGCATAG
--NGTGGGCAT--
 C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACAAGGGGCATAG
-GGAGGGGGAA--
 C G T A A G T C G T C A C G T A A C T G A C T G A C T G A C T G A G T C C G T A A G C T C G T A A C T G
A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T