Information for 6-CGGTGATGCCTGG (Motif 8)

T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A C A T G A C T G A G T C C G T A A C G T A T G C C G T A A G T C A G T C A C T G
p-value:1e-8
log p-value:-2.070e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 34.1bp
Average Position of motif in Background76.1 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGTGATGCCTGG----
-NGTCACGCTTGGCTGC
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CGGTGATGCCTGG
GCGGAGGTGTCGCCTC-
 A C G T A C G T A C G T A C G T T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGTGATGCCTGG-----
-NNTNNTGTCTGGNNTNG
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGTGATGCCTGG----
--GTCATGCHTGRCTGS
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGGTGATGCCTGG
-GGTGYTGACAGS
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G
A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGGTGATGCCTGG---
-GGTCANYTGAGGWCA
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G A C G T A C G T A C G T
A C G T C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGGTGATGCCTGG-
--ATGATKGATGRC
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGGTGATGCCTGG-----
-CGTCACGCATGACTGCA
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGGTGATGCCTGG
--GTCATN-----
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G
A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CGGTGATGCCTGG
-NATGTTGCAA--
 T A G C A C T G A C T G A C G T A T C G C G T A A C G T A C T G A G T C G A T C C G A T A C T G A C T G
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T