Information for 3-AGCCAGTGTGTTC (Motif 5)

C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C
Reverse Opposite:
A C T G G T C A C G T A A G T C C T G A A G T C C T G A A G T C A C G T A C T G A C T G A G T C A G C T
p-value:1e-11
log p-value:-2.617e+01
Information Content per bp:1.931
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 36.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGCCAGTGTGTTC----
-NNGCGTGTGTGCNGCN
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

GLI2/MA0734.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGCCAGTGTGTTC--
---CAGTGTGGTCGC
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAGTGTGTTC-
NNNCCATTGTGTNAN
 A C G T C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----AGCCAGTGTGTTC
NNNNTGCCAGTGATTG-
 A C G T A C G T A C G T A C G T C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGCCAGTGTGTTC--
GVACAGNMTGTYCTB
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGCCAGTGTGTTC----
--CCATTGTATGCAAAT
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AGCCAGTGTGTTC----
-------CTGTTCCTGG
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCCAGTGTGTTC--
AGNACAGNCTGTTCTN
 A C G T C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGCCAGTGTGTTC
--CCATTGTTYB-
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCCAGTGTGTTC--
GRACAGWMTGTYCTB
 C T G A A C T G A G T C G T A C C G T A A C T G A G C T A C T G A G C T A C T G A C G T A C G T A G T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G