Information for 3-GAGGDGCAGA (Motif 9)

A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A
Reverse Opposite:
C A G T A T G C A C G T A C T G A T G C G T C A G T A C G T A C A G C T A T G C
p-value:1e-11
log p-value:-2.591e+01
Information Content per bp:1.732
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif5.28%
Number of Background Sequences with motif692.7
Percentage of Background Sequences with motif1.41%
Average Position of motif in Targets52.0 +/- 27.5bp
Average Position of motif in Background49.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGGDGCAGA-----
CAGATGTGCACATACGT
 A C G T A C G T A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGGDGCAGA-----
TACATGTGCACATAAAA
 A C G T A C G T A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGGDGCAGA----
AGATGKDGAGATAAG
 A C G T A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A A C G T A C G T A C G T A C G T
C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGGDGCAGA
NGTGGGCAT-
 A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GAGGDGCAGA-----
-----CCAGACRSVB
 A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGGDGCAGA
GGAGGGGGAA-
 A C G T A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGGDGCAGA---
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGGDGCAGA
TNNGGGCAG-
 A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGGDGCAGA
-ATTTGCATA
 A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A
A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGGDGCAGA
BTGABTGACAGS
 A C G T A C G T A T C G T C G A C A T G A C T G C A G T A T C G T G A C C G T A T A C G G T C A
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C